PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00114g00127.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 284aa    MW: 32385.1 Da    PI: 7.4934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00114g00127.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-161493146
                              TSSS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqk 46
                              rg+W++eEd +l++ ++++G+g                                   +W+ Ia+ ++ gRt++++k++w++
  Peaxi162Scf00114g00127.1 14 RGPWSPEEDAKLKEFIEKYGTGgnwialpqkaaytptleagkknisyievklihlcdRWSIIAAQLP-GRTDNDIKNYWNT 93
                              89*****************************************************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22535IPR009057Homeodomain-like
PROSITE profilePS5129415.302999IPR017930Myb domain
SuperFamilySSF466891.38E-121191IPR009057Homeodomain-like
SMARTSM007171.4E-151397IPR001005SANT/Myb domain
PfamPF002492.2E-61442IPR001005SANT/Myb domain
CDDcd001672.20E-101695No hitNo description
PfamPF002492.8E-67093IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-227199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKEFIE KYGTGGNWIA LPQKAAYTPT LEAGKKNISY  60
IEVKLIHLCD RWSIIAAQLP GRTDNDIKNY WNTKLKKKLM GLMHSSNQRK SPFFPSTTLQ  120
TITPTQPQTI SSLFRYSYQE PNISSVQPNF MYNNNHMNFQ LGTNNQYSYF HCQESLVNPI  180
KQEEMGNCLE GQTPRTFDHE TQKFTLDYGN NIGGGGDHNL SAWAHDQKPN GYLANNFQTQ  240
FQYDVEEIKE LISSSSNGSG CNNNSSLLFV NDENKPNERG MFYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-38HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616199.11e-107PREDICTED: transcription factor RAX2-like
TrEMBLK4C9K83e-72K4C9K8_SOLLC; Uncharacterized protein
STRINGSolyc06g074920.1.18e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-43myb domain protein 36